STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE50620.1gluconate:H+ symporter, GntP family. (466 aa)    
Predicted Functional Partners:
SHE50588.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
  
 0.637
SHE29132.1
Kynurenine formamidase.
      0.636
SHE50553.1
DNA-binding transcriptional regulator, FadR family.
 
   
 0.453
SHE29180.1
6-phosphogluconate dehydrogenase (decarboxylating).
 
  
 0.447
SHE50658.1
L-iditol 2-dehydrogenase.
       0.433
SHE38973.1
PTS system, glucose-specific IIC component.
  
  
 0.430
SHE50691.1
2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Belongs to the RuBisCO large chain family.
       0.405
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.