STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE52470.1ABC-2 type transport system permease protein. (241 aa)    
Predicted Functional Partners:
SHE52433.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.943
SHE52398.1
DNA-binding transcriptional regulator, MerR family.
 
    0.937
SHE52508.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.737
SHF20892.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.694
SHE85073.1
CAAX protease self-immunity.
 
  
 0.690
SHE52542.1
Hypothetical protein.
       0.661
SHF20856.1
ABC-2 type transport system permease protein.
  
  
 0.623
SHE30640.1
DNA-binding transcriptional regulator, MerR family.
 
    0.539
SHE52357.1
cation:H+ antiporter.
       0.531
SHE79659.1
Putative ABC transport system permease protein.
 
  
 0.504
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.