STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF06130.1Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (334 aa)    
Predicted Functional Partners:
SHE31796.1
uroporphyrinogen-III synthase.
  
 
 0.842
SHE91146.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
    0.742
SHF15295.1
Methanogenic corrinoid protein MtbC1.
  
 
  0.654
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
 0.614
SHF09889.1
Glutamate synthase (ferredoxin).
    
 0.569
SHF06101.1
Protein of unknown function.
       0.561
SHF19511.1
Trimethylamine---corrinoid protein Co-methyltransferase.
  
  
  0.559
SHE94568.1
Uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.553
SHF19634.1
Predicted metal-binding protein.
  
     0.544
SHF06039.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
       0.537
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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