STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF16874.1Glycopeptide antibiotics resistance protein. (176 aa)    
Predicted Functional Partners:
SHE86457.1
VanZ like family protein.
  
     0.735
SHF16906.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
       0.461
SHF16835.1
HD domain-containing protein.
       0.449
SHF13051.1
Cystathionine beta-lyase family protein involved in aluminum resistance.
  
     0.447
SHF16941.1
Glycosyl transferase family 2.
       0.405
SHF16974.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.405
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.