STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF22128.1Lipopolysaccharide cholinephosphotransferase. (276 aa)    
Predicted Functional Partners:
SHF22162.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
   
 0.840
SHF22191.1
Coenzyme F420-reducing hydrogenase, beta subunit.
       0.725
SHF22256.1
Glycerol-3-phosphate cytidylyltransferase.
 
     0.721
SHF22222.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
       0.720
SHF22096.1
Glycosyltransferase involved in cell wall bisynthesis.
     0.596
SHF22288.1
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.539
SHF22030.1
Glycosyl transferase family 2.
      0.456
SHF21996.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.431
SHF22063.1
Oligosaccharide repeat unit polymerase.
       0.428
Your Current Organism:
Alkalibacter saccharofermentans
NCBI taxonomy Id: 1120975
Other names: A. saccharofermentans DSM 14828, Alkalibacter saccharofermentans DSM 14828
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