STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsDUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (207 aa)    
Predicted Functional Partners:
rpsT
Unannotated protein; Binds directly to 16S ribosomal RNA.
   
 
 0.999
rpsU
Unannotated protein; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.999
E2B99_14040
Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
 0.999
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.999
rpsR
Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.999
rpsB
Unannotated protein; Belongs to the universal ribosomal protein uS2 family.
 
 0.999
rpsI
Unannotated protein; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.999
rpsJ
Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
 
 0.999
rplD
Unannotated protein; Forms part of the polypeptide exit tunnel.
 
 0.999
rpsS
Unannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
 
 0.999
Your Current Organism:
Alkanindiges illinoisensis
NCBI taxonomy Id: 1120977
Other names: A. illinoisensis DSM 15370, Alkanindiges illinoisensis DSM 15370
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.