STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000619845_02400Unannotated protein. (250 aa)    
Predicted Functional Partners:
GCA_000619845_02399
Unannotated protein.
  
  
 0.942
GCA_000619845_02401
Unannotated protein.
  
  
 0.940
GCA_000619845_02398
Unannotated protein.
  
  
 0.929
GCA_000619845_02402
Unannotated protein.
  
  
 0.908
GCA_000619845_02403
Unannotated protein.
  
  
 0.907
GCA_000619845_02397
Unannotated protein.
  
  
 0.831
ispH
Unannotated protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.615
trmD
Unannotated protein; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.514
gmk
Unannotated protein; Essential for recycling GMP and indirectly, cGMP.
       0.502
rimM
Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.498
Your Current Organism:
Alkanindiges illinoisensis
NCBI taxonomy Id: 1120977
Other names: A. illinoisensis DSM 15370, Alkanindiges illinoisensis DSM 15370
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.