SES68797.1 protein (Anaerobranca gottschalkii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SES68797.1

Protein of unknown function. (87 aa)

Predicted Functional Partners:

SES68816.1

0.704

SES99520.1

0.698

SES62322.1

0.620

SES62226.1

0.613

SES62501.1

0.566

SET10260.1

0.548

pyrC

0.543

pyrF

0.543

SES68749.1

0.543

pyrD

0.543

Your Current Organism:

Anaerobranca gottschalkii

NCBI taxonomy Id: 1120990
Other names: A. gottschalkii DSM 13577, Anaerobranca gottschalkii DSM 13577

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SES62226.1	SES62322.1	SAMN03080614_100127	SAMN03080614_100137	Protein of unknown function.	Stage V sporulation protein AE.	0.724
SES62226.1	SES62501.1	SAMN03080614_100127	SAMN03080614_100156	Protein of unknown function.	Stage II sporulation protein M.	0.666
SES62226.1	SES68797.1	SAMN03080614_100127	SAMN03080614_100349	Protein of unknown function.	Protein of unknown function.	0.613
SES62226.1	SES68816.1	SAMN03080614_100127	SAMN03080614_100350	Protein of unknown function.	Spore germination protein (amino acid permease).	0.462
SES62226.1	SES99520.1	SAMN03080614_100127	SAMN03080614_10297	Protein of unknown function.	Sporulation protein YtrH.	0.687
SES62226.1	SET10260.1	SAMN03080614_100127	SAMN03080614_104822	Protein of unknown function.	Uncharacterised protein family (UPF0180).	0.482
SES62322.1	SES62226.1	SAMN03080614_100137	SAMN03080614_100127	Stage V sporulation protein AE.	Protein of unknown function.	0.724
SES62322.1	SES62501.1	SAMN03080614_100137	SAMN03080614_100156	Stage V sporulation protein AE.	Stage II sporulation protein M.	0.520
SES62322.1	SES68797.1	SAMN03080614_100137	SAMN03080614_100349	Stage V sporulation protein AE.	Protein of unknown function.	0.620
SES62322.1	SES99520.1	SAMN03080614_100137	SAMN03080614_10297	Stage V sporulation protein AE.	Sporulation protein YtrH.	0.497
SES62322.1	SET10260.1	SAMN03080614_100137	SAMN03080614_104822	Stage V sporulation protein AE.	Uncharacterised protein family (UPF0180).	0.638
SES62501.1	SES62226.1	SAMN03080614_100156	SAMN03080614_100127	Stage II sporulation protein M.	Protein of unknown function.	0.666
SES62501.1	SES62322.1	SAMN03080614_100156	SAMN03080614_100137	Stage II sporulation protein M.	Stage V sporulation protein AE.	0.520
SES62501.1	SES68797.1	SAMN03080614_100156	SAMN03080614_100349	Stage II sporulation protein M.	Protein of unknown function.	0.566
SES62501.1	SES68816.1	SAMN03080614_100156	SAMN03080614_100350	Stage II sporulation protein M.	Spore germination protein (amino acid permease).	0.563
SES62501.1	SES99520.1	SAMN03080614_100156	SAMN03080614_10297	Stage II sporulation protein M.	Sporulation protein YtrH.	0.648
SES68749.1	SES68797.1	SAMN03080614_100346	SAMN03080614_100349	Dihydroorotate dehydrogenase electron transfer subunit.	Protein of unknown function.	0.543
SES68749.1	pyrC	SAMN03080614_100346	SAMN03080614_100344	Dihydroorotate dehydrogenase electron transfer subunit.	Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.	0.998
SES68749.1	pyrD	SAMN03080614_100346	SAMN03080614_100347	Dihydroorotate dehydrogenase electron transfer subunit.	Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.	0.999
SES68749.1	pyrF	SAMN03080614_100346	SAMN03080614_100345	Dihydroorotate dehydrogenase electron transfer subunit.	Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.	0.968