rpmE protein (Anaerobranca gottschalkii) - STRING interaction network

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second shell of interactors

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

rpmE

Large subunit ribosomal protein L31; Binds the 23S rRNA. (67 aa)

Predicted Functional Partners:

rpmF

0.982

rpmI

0.981

rpsI

0.980

rpsD

0.978

rplU

0.976

rpmA

0.976

rpsT

0.976

rplM

0.976

rpsP

0.976

rpmB

0.975

Your Current Organism:

Anaerobranca gottschalkii

NCBI taxonomy Id: 1120990
Other names: A. gottschalkii DSM 13577, Anaerobranca gottschalkii DSM 13577

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	SAMN03080614_101718	SAMN03080614_100277	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rplM	rpmA	SAMN03080614_101718	SAMN03080614_100279	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplM	rpmB	SAMN03080614_101718	SAMN03080614_100591	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.994
rplM	rpmE	SAMN03080614_101718	SAMN03080614_101242	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L31; Binds the 23S rRNA.	0.976
rplM	rpmF	SAMN03080614_101718	SAMN03080614_1005107	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.994
rplM	rpmI	SAMN03080614_101718	SAMN03080614_100661	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.994
rplM	rpsD	SAMN03080614_101718	SAMN03080614_101725	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
rplM	rpsI	SAMN03080614_101718	SAMN03080614_101717	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsP	SAMN03080614_101718	SAMN03080614_103914	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.995
rplM	rpsT	SAMN03080614_101718	SAMN03080614_100296	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.994
rplU	rplM	SAMN03080614_100277	SAMN03080614_101718	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.995
rplU	rpmA	SAMN03080614_100277	SAMN03080614_100279	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplU	rpmB	SAMN03080614_100277	SAMN03080614_100591	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.995
rplU	rpmE	SAMN03080614_100277	SAMN03080614_101242	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Large subunit ribosomal protein L31; Binds the 23S rRNA.	0.976
rplU	rpmF	SAMN03080614_100277	SAMN03080614_1005107	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.995
rplU	rpmI	SAMN03080614_100277	SAMN03080614_100661	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.994
rplU	rpsD	SAMN03080614_100277	SAMN03080614_101725	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.994
rplU	rpsI	SAMN03080614_100277	SAMN03080614_101717	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.996
rplU	rpsP	SAMN03080614_100277	SAMN03080614_103914	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.995
rplU	rpsT	SAMN03080614_100277	SAMN03080614_100296	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.995