STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG91412.1Trk system potassium uptake protein TrkH. (450 aa)    
Predicted Functional Partners:
SHG91446.1
Trk system potassium uptake protein TrkA.
 
 0.997
SHH01133.1
Trk system potassium uptake protein TrkA.
  
 
 0.731
SHH10451.1
Trk system potassium uptake protein TrkA.
  
 
 0.731
rplT
Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.654
rpmI
Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.622
infC
Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.606
SHG91504.1
Protein of unknown function.
       0.605
SHG93132.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.566
SHH40749.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.531
rpmE
Large subunit ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
    0.466
Your Current Organism:
Anaerosphaera aminiphila
NCBI taxonomy Id: 1120995
Other names: A. aminiphila DSM 21120, Anaerosphaera aminiphila DSM 21120, Anaerosphaera aminiphila WN036, Peptostreptococcaceae bacterium WN036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.