STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG97221.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
SHG97253.1
RNA methyltransferase, TrmH family.
       0.792
SHH25500.1
Radical SAM superfamily protein.
 
     0.775
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.741
SHH35463.1
DnaD and phage-associated domain-containing protein.
  
     0.737
SHH45242.1
Hypothetical protein.
  
     0.698
SHH11202.1
N-glycosylase/DNA lyase.
  
     0.697
SHG96616.1
Protein of unknown function.
  
     0.670
SHG91504.1
Protein of unknown function.
  
     0.650
SHG97502.1
FHA domain-containing protein.
 
     0.626
SHH35428.1
DNA replication protein DnaC.
  
     0.612
Your Current Organism:
Anaerosphaera aminiphila
NCBI taxonomy Id: 1120995
Other names: A. aminiphila DSM 21120, Anaerosphaera aminiphila DSM 21120, Anaerosphaera aminiphila WN036, Peptostreptococcaceae bacterium WN036
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