STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM23300.1Twitching motility protein PilT. (354 aa)    
Predicted Functional Partners:
SHM23276.1
Type IV pilus assembly protein PilC.
  
 0.979
SHM23239.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
   
 0.923
SHM23317.1
Type IV pilus assembly protein PilB.
 
  
0.882
SHM23216.1
Type IV pilus assembly protein PilM.
 
   
 0.830
SHM23256.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
   
 0.753
SHL95162.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.626
SHM23196.1
Hypothetical protein.
  
  
 0.588
SHM21420.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.561
SHM30289.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.556
SHM23177.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
     
 0.461
Your Current Organism:
Anaerosporobacter mobilis
NCBI taxonomy Id: 1120996
Other names: A. mobilis DSM 15930, Anaerosporobacter mobilis DSM 15930
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