STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM38240.1DNA-binding transcriptional regulator, Lrp family. (152 aa)    
Predicted Functional Partners:
SHM62518.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.875
SHM30289.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.855
SHM13300.1
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein.
  
     0.757
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
 
 0.655
SHM07124.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.614
SHM57837.1
PTS system beta-glucoside-specific IIA component, Glc family /PTS system beta-glucoside-specific IIB component, Glc family /PTS system beta-glucoside-specific IIC component, Glc family.
   
 
  0.601
SHM91093.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
   
 
  0.601
SHM91203.1
PTS system, beta-glucosides-specific IIC component.
   
 
  0.601
SHM38221.1
Putative efflux protein, MATE family.
  
    0.519
SHM10556.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.510
Your Current Organism:
Anaerosporobacter mobilis
NCBI taxonomy Id: 1120996
Other names: A. mobilis DSM 15930, Anaerosporobacter mobilis DSM 15930
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