SHM85818.1 protein (Anaerosporobacter mobilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHM85818.1

HD domain-containing protein. (161 aa)

Predicted Functional Partners:

SHL95162.1

0.776

SHM73267.1

0.673

SHM21420.1

0.664

SHM59248.1

0.605

SHM92925.1

0.605

SHL94672.1

0.597

SHM79043.1

0.558

SHM30289.1

0.514

SHM85800.1

0.509

SHM46635.1

0.487

Your Current Organism:

Anaerosporobacter mobilis

NCBI taxonomy Id: 1120996
Other names: A. mobilis DSM 15930, Anaerosporobacter mobilis DSM 15930

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHL94672.1	SHL95162.1	SAMN02746066_00163	SAMN02746066_00187	Pyruvate kinase; Belongs to the pyruvate kinase family.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.879
SHL94672.1	SHM21420.1	SAMN02746066_00163	SAMN02746066_01197	Pyruvate kinase; Belongs to the pyruvate kinase family.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.868
SHL94672.1	SHM30289.1	SAMN02746066_00163	SAMN02746066_01487	Pyruvate kinase; Belongs to the pyruvate kinase family.	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	0.979
SHL94672.1	SHM59248.1	SAMN02746066_00163	SAMN02746066_02553	Pyruvate kinase; Belongs to the pyruvate kinase family.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.713
SHL94672.1	SHM85818.1	SAMN02746066_00163	SAMN02746066_03627	Pyruvate kinase; Belongs to the pyruvate kinase family.	HD domain-containing protein.	0.597
SHL94672.1	SHM92925.1	SAMN02746066_00163	SAMN02746066_03946	Pyruvate kinase; Belongs to the pyruvate kinase family.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.713
SHL95162.1	SHL94672.1	SAMN02746066_00187	SAMN02746066_00163	Diguanylate cyclase (GGDEF) domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.879
SHL95162.1	SHM21420.1	SAMN02746066_00187	SAMN02746066_01197	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.997
SHL95162.1	SHM30289.1	SAMN02746066_00187	SAMN02746066_01487	Diguanylate cyclase (GGDEF) domain-containing protein.	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	0.494
SHL95162.1	SHM59248.1	SAMN02746066_00187	SAMN02746066_02553	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.996
SHL95162.1	SHM85818.1	SAMN02746066_00187	SAMN02746066_03627	Diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.776
SHL95162.1	SHM92925.1	SAMN02746066_00187	SAMN02746066_03946	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.996
SHM21420.1	SHL94672.1	SAMN02746066_01197	SAMN02746066_00163	Diguanylate cyclase (GGDEF) domain-containing protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.868
SHM21420.1	SHL95162.1	SAMN02746066_01197	SAMN02746066_00187	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.997
SHM21420.1	SHM59248.1	SAMN02746066_01197	SAMN02746066_02553	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.990
SHM21420.1	SHM79043.1	SAMN02746066_01197	SAMN02746066_03293	Diguanylate cyclase (GGDEF) domain-containing protein.	5-methyltetrahydrofolate--homocysteine methyltransferase.	0.815
SHM21420.1	SHM85818.1	SAMN02746066_01197	SAMN02746066_03627	Diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.664
SHM21420.1	SHM92925.1	SAMN02746066_01197	SAMN02746066_03946	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.990
SHM30289.1	SHL94672.1	SAMN02746066_01487	SAMN02746066_00163	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.979
SHM30289.1	SHL95162.1	SAMN02746066_01487	SAMN02746066_00187	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.494