Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM21618.1 | SHM93439.1 | SAMN02746066_01206 | SAMN02746066_03976 | RNA polymerase sigma factor, sigma-70 family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.822 |
SHM21618.1 | SHM98496.1 | SAMN02746066_01206 | SAMN02746066_04210 | RNA polymerase sigma factor, sigma-70 family. | Arsenate reductase; Belongs to the ArsC family. | 0.599 |
SHM21618.1 | rpoA | SAMN02746066_01206 | SAMN02746066_01497 | RNA polymerase sigma factor, sigma-70 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.872 |
SHM21618.1 | rpoB | SAMN02746066_01206 | SAMN02746066_02116 | RNA polymerase sigma factor, sigma-70 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.895 |
SHM21618.1 | rpoC | SAMN02746066_01206 | SAMN02746066_02117 | RNA polymerase sigma factor, sigma-70 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.863 |
SHM82516.1 | SHM93439.1 | SAMN02746066_03456 | SAMN02746066_03976 | Sigma-70, region 4. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.822 |
SHM82516.1 | SHM98496.1 | SAMN02746066_03456 | SAMN02746066_04210 | Sigma-70, region 4. | Arsenate reductase; Belongs to the ArsC family. | 0.599 |
SHM82516.1 | rpoA | SAMN02746066_03456 | SAMN02746066_01497 | Sigma-70, region 4. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.840 |
SHM82516.1 | rpoB | SAMN02746066_03456 | SAMN02746066_02116 | Sigma-70, region 4. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.864 |
SHM82516.1 | rpoC | SAMN02746066_03456 | SAMN02746066_02117 | Sigma-70, region 4. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.846 |
SHM90753.1 | SHM93439.1 | SAMN02746066_03849 | SAMN02746066_03976 | Exodeoxyribonuclease-3. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.604 |
SHM90753.1 | SHM98496.1 | SAMN02746066_03849 | SAMN02746066_04210 | Exodeoxyribonuclease-3. | Arsenate reductase; Belongs to the ArsC family. | 0.758 |
SHM90753.1 | rpoA | SAMN02746066_03849 | SAMN02746066_01497 | Exodeoxyribonuclease-3. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.485 |
SHM90753.1 | rpoB | SAMN02746066_03849 | SAMN02746066_02116 | Exodeoxyribonuclease-3. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.446 |
SHM93439.1 | SHM21618.1 | SAMN02746066_03976 | SAMN02746066_01206 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | RNA polymerase sigma factor, sigma-70 family. | 0.822 |
SHM93439.1 | SHM82516.1 | SAMN02746066_03976 | SAMN02746066_03456 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Sigma-70, region 4. | 0.822 |
SHM93439.1 | SHM90753.1 | SAMN02746066_03976 | SAMN02746066_03849 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Exodeoxyribonuclease-3. | 0.604 |
SHM93439.1 | SHM98496.1 | SAMN02746066_03976 | SAMN02746066_04210 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Arsenate reductase; Belongs to the ArsC family. | 0.651 |
SHM93439.1 | rpoA | SAMN02746066_03976 | SAMN02746066_01497 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SHM93439.1 | rpoB | SAMN02746066_03976 | SAMN02746066_02116 | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
page 1 of 4