STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ51818.1Integrase core domain-containing protein. (65 aa)    
Predicted Functional Partners:
SFJ50560.1
Homeodomain-like domain-containing protein.
 
     0.924
SFJ53332.1
Homeodomain-like domain-containing protein.
 
     0.924
SFJ50591.1
Transposase.
  
    0.745
SFJ53307.1
Transposase.
  
    0.745
SFJ08264.1
Transposase.
  
    0.744
SFJ43799.1
Transposase.
  
    0.743
SFJ45592.1
Transposase.
  
    0.743
SFJ49301.1
Transposase.
  
    0.743
SFJ64485.1
Transposase.
  
    0.743
SFJ51850.1
Flagellar motor switch protein FliG.
       0.420
Your Current Organism:
Aquamicrobium aerolatum
NCBI taxonomy Id: 1121003
Other names: A. aerolatum DSM 21857, Aquamicrobium aerolatum DSM 21857
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