GCA_000426385_02132 protein (Arsenicicoccus bolidensis)

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Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

GCA_000426385_02132

Unannotated protein. (295 aa)

Predicted Functional Partners:

GCA_000426385_02717

Unannotated protein.

0.579

GCA_000426385_02130

Unannotated protein.

0.480

Your Current Organism:

Arsenicicoccus bolidensis

NCBI taxonomy Id: 1121017
Other names: A. bolidensis DSM 15745, Arsenicicoccus bolidensis DSM 15745

Basic Settings

Network type:

full STRING network

( the edges indicate both functional and physical protein associations )

physical subnetwork

( the edges indicate that the proteins are part of a physical complex )

meaning of network edges:

evidence

( line color indicates the type of interaction evidence )

confidence

( line thickness indicates the strength of data support )

active interaction sources:

Textmining

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Co‑expression

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000426385_02130	GCA_000426385_02132	Unannotated protein.	Unannotated protein.	0.480
GCA_000426385_02132	GCA_000426385_02130	Unannotated protein.	Unannotated protein.	0.480
GCA_000426385_02132	GCA_000426385_02717	Unannotated protein.	Unannotated protein.	0.579
GCA_000426385_02717	GCA_000426385_02132	Unannotated protein.	Unannotated protein.	0.579

[ The below analysis is limited to the network nodes included in the specified statistical background ]

Network Stats

number of nodes:

number of edges:

average node degree:

5.82

avg. local clustering coefficient:

0.879

expected number of edges:

PPI enrichment p-value:

0.000591

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009225

Nucleotide-sugar metabolic process

3 of 11

1.84

0.88

0.0195

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2038

Mixed, incl. Polyketide sugar unit biosynthesis, and UDP binding domain

5 of 13

1.99

2.7

1.67e-06

CL:2040

Polyketide sugar unit biosynthesis, and Methyltransferase domain

4 of 7

2.16

2.46

1.28e-05

CL:961

Permease LptG/LptF-related, and Lipopolysaccharide transport

3 of 6

2.1

1.84

0.00025

CL:944

Lipopolysaccharide biosynthesis, and Permease LptG/LptF-related

4 of 21

1.68

0.00016

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00541

O-Antigen nucleotide sugar biosynthesis

4 of 19

1.72

1.74

0.00014

map00523

Polyketide sugar unit biosynthesis

2 of 4

2.1

1.01

0.0128

map00521

Streptomycin biosynthesis

2 of 11

1.66

0.69

0.0437

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

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