STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE66815.1ABC-2 type transport system ATP-binding protein. (244 aa)    
Predicted Functional Partners:
SHE66852.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
  
 0.971
SHE66781.1
Hypothetical protein.
       0.780
SHE66745.1
Hypothetical protein.
       0.741
SHE66714.1
Glycopeptide antibiotics resistance protein.
       0.657
SHE28484.1
ABC-2 type transport system ATP-binding protein.
 
 
 
0.646
atpD-2
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.562
SHF18921.1
Protein of unknown function.
  
     0.556
atpA-2
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.553
SHF02917.1
F-type H+-transporting ATPase subunit gamma.
   
   0.552
atpC
F-type H+-transporting ATPase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.539
Your Current Organism:
Atopostipes suicloacalis
NCBI taxonomy Id: 1121025
Other names: A. suicloacalis DSM 15692, Atopostipes suicloacalis DSM 15692
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