STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421665_00930Unannotated protein. (259 aa)    
Predicted Functional Partners:
GCA_000421665_00931
Unannotated protein.
 
  
 0.965
GCA_000421665_00932
Unannotated protein.
  
  
 0.932
GCA_000421665_00933
Unannotated protein.
  
  
 0.903
GCA_000421665_00936
Unannotated protein.
  
  
 0.883
GCA_000421665_00935
Unannotated protein.
  
  
 0.843
truB
Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
 
 0.843
GCA_000421665_00951
Unannotated protein.
  
 
 0.765
GCA_000421665_01974
Unannotated protein.
   
 
 0.760
rsmH
Unannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
 
 0.750
mraW
Unannotated protein.
   
 
 0.750
Your Current Organism:
Bavariicoccus seileri
NCBI taxonomy Id: 1121105
Other names: B. seileri DSM 19936, Bavariicoccus seileri DSM 19936
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.