STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE51389.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
SHE51246.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
       0.773
SHE51290.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.773
SHE51335.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.773
SHE51423.1
Type IV pilus assembly protein PilM.
       0.737
SHE51462.1
Type IV pilus assembly protein PilN.
       0.737
SHE51507.1
Pilus assembly protein, PilO.
       0.737
SHE51192.1
Type IV pilus assembly protein PilA.
       0.727
SHE51547.1
Competence protein ComFB.
       0.685
SHE51063.1
Type II secretion system protein E (GspE).
       0.649
SHE51107.1
Twitching motility protein PilT.
       0.649
Your Current Organism:
Caldanaerobius fijiensis
NCBI taxonomy Id: 1121256
Other names: C. fijiensis DSM 17918, Caldanaerobius fijiensis DSM 17918
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.