STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ95525.1Serine phosphatase RsbU, regulator of sigma subunit. (285 aa)    
Predicted Functional Partners:
SHJ95483.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.986
SHJ93144.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.946
SHJ95444.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.899
SHJ93116.1
Serine/threonine-protein kinase RsbW.
 
 0.883
SHK02805.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.808
SHJ93089.1
RNA polymerase, sigma 37 subunit, RpsB/SigB; Belongs to the sigma-70 factor family.
 
 
 0.754
SHJ95412.1
Two-component system, chemotaxis family, sensor kinase CheA.
    
  0.747
SHJ95376.1
Purine-binding chemotaxis protein CheW.
 
     0.709
SHK59584.1
Diguanylate cyclase, GGDEF domain.
  
 
 0.701
SHK11809.1
Flagellar protein FlgJ.
   
    0.672
Your Current Organism:
Caminicella sporogenes
NCBI taxonomy Id: 1121266
Other names: C. sporogenes DSM 14501, Caminicella sporogenes DSM 14501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.