STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK31742.1Prophage antirepressor. (265 aa)    
Predicted Functional Partners:
SHK31798.1
HTH domain-containing protein.
 
    0.923
SHK31677.1
Helicase conserved C-terminal domain-containing protein.
 
    0.868
SHK31615.1
PD-(D/E)XK nuclease superfamily protein.
 
   
 0.860
SHK31468.1
Putative DNA primase/helicase.
 
     0.800
SHK31771.1
Hypothetical protein.
  
    0.752
SHK31333.1
5-methylcytosine-specific restriction enzyme A.
 
     0.592
SHK31644.1
VRR-NUC domain-containing protein.
  
    0.572
SHK31709.1
Helix-turn-helix.
       0.570
SHK31495.1
Prophage antirepressor.
 
    
0.546
SHK31302.1
Hypothetical protein.
 
     0.537
Your Current Organism:
Caminicella sporogenes
NCBI taxonomy Id: 1121266
Other names: C. sporogenes DSM 14501, Caminicella sporogenes DSM 14501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.