STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK59537.1Transposase. (202 aa)    
Predicted Functional Partners:
SHK49432.1
Integrase core domain-containing protein.
 
    
0.873
SHK27439.1
Hypothetical protein.
 
  
 0.760
SHK49461.1
DNA replication protein DnaC.
 
  
 0.730
SHK12467.1
IstB-like ATP binding protein.
  
 0.691
SHK27479.1
IstB-like ATP binding protein.
  
 0.687
SHJ63866.1
IstB-like ATP binding protein.
 
     0.675
SHK58086.1
Hypothetical protein.
  
     0.443
SHK16826.1
Sporulation related domain-containing protein.
  
     0.434
SHK16777.1
Uncharacterized protein YdaL.
  
     0.420
SHK59507.1
Protein of unknown function.
       0.401
Your Current Organism:
Caminicella sporogenes
NCBI taxonomy Id: 1121266
Other names: C. sporogenes DSM 14501, Caminicella sporogenes DSM 14501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.