STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT98089.1N-carbamoylputrescine amidase. (291 aa)    
Predicted Functional Partners:
SIT98087.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
 
 0.998
SIT98088.1
Glyoxylase, beta-lactamase superfamily II.
       0.787
SIT97256.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.632
SIT96709.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
  0.586
SIT96045.1
Phosphoribosylformylglycinamidine synthase.
  
 
 0.525
SIT98090.1
Acyl-CoA hydrolase.
       0.509
SIT98156.1
Glutamate synthases, NADH/NADPH, small subunit.
  
 0.468
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.464
SIT97192.1
Dihydroorotase.
  
 
 0.459
SIT98086.1
Drug resistance transporter, EmrB/QacA subfamily.
       0.456
Your Current Organism:
Chryseobacterium bovis
NCBI taxonomy Id: 1121284
Other names: C. bovis DSM 19482, Chryseobacterium bovis DSM 19482
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