STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC18296.1O-antigen ligase. (435 aa)    
Predicted Functional Partners:
SMC21002.1
Hypothetical protein.
  
  
 0.982
SMC18279.1
Heparin/heparan-sulfate lyase.
       0.742
SMC18344.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.728
SMC18263.1
Capsular exopolysaccharide family.
 
  
 0.727
SMC18311.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.726
SMC18256.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.704
SMC18304.1
Asparagine synthase (glutamine-hydrolysing).
  
    0.670
SMC20992.1
Glycosyltransferase, GT2 family.
  
 
 0.666
SMC20993.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.666
SMC18335.1
GDP-mannose 6-dehydrogenase.
  
  
 0.665
Your Current Organism:
Clostridium acidisoli
NCBI taxonomy Id: 1121291
Other names: C. acidisoli DSM 12555, Clostridium acidisoli DSM 12555
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.