STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC29010.1DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. (1535 aa)    
Predicted Functional Partners:
SMC29009.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
 
 
 0.983
SMC21596.1
Serine/threonine protein kinase.
  
 
 0.942
SMC22588.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.923
SMC22656.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.923
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.919
SMC25370.1
PAS domain S-box-containing protein.
  
 
 0.918
SMC18192.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.907
SMC22080.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.907
SMC17730.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
  
 
 0.896
SMC26610.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
  
 
 0.896
Your Current Organism:
Clostridium acidisoli
NCBI taxonomy Id: 1121291
Other names: C. acidisoli DSM 12555, Clostridium acidisoli DSM 12555
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