Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHJ48728.1 | SHJ78692.1 | SAMN02745912_00088 | SAMN02745912_01062 | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Hypothetical protein. | 0.513 |
| SHJ48728.1 | SHJ78703.1 | SAMN02745912_00088 | SAMN02745912_01063 | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | PAS domain S-box-containing protein. | 0.767 |
| SHJ48728.1 | SHJ78722.1 | SAMN02745912_00088 | SAMN02745912_01064 | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Response regulator receiver domain-containing protein. | 0.820 |
| SHJ48728.1 | SHJ88077.1 | SAMN02745912_00088 | SAMN02745912_01463 | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | Two-component system, NtrC family, sensor histidine kinase AtoS. | 0.467 |
| SHJ57441.1 | SHJ78692.1 | SAMN02745912_00362 | SAMN02745912_01062 | Transglycosylase SLT domain-containing protein. | Hypothetical protein. | 0.415 |
| SHJ71491.1 | SHJ78692.1 | SAMN02745912_00842 | SAMN02745912_01062 | PAS domain S-box-containing protein. | Hypothetical protein. | 0.647 |
| SHJ71491.1 | SHJ78722.1 | SAMN02745912_00842 | SAMN02745912_01064 | PAS domain S-box-containing protein. | Response regulator receiver domain-containing protein. | 0.815 |
| SHJ71491.1 | SHJ88077.1 | SAMN02745912_00842 | SAMN02745912_01463 | PAS domain S-box-containing protein. | Two-component system, NtrC family, sensor histidine kinase AtoS. | 0.405 |
| SHJ78692.1 | SHJ48728.1 | SAMN02745912_01062 | SAMN02745912_00088 | Hypothetical protein. | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.513 |
| SHJ78692.1 | SHJ57441.1 | SAMN02745912_01062 | SAMN02745912_00362 | Hypothetical protein. | Transglycosylase SLT domain-containing protein. | 0.415 |
| SHJ78692.1 | SHJ71491.1 | SAMN02745912_01062 | SAMN02745912_00842 | Hypothetical protein. | PAS domain S-box-containing protein. | 0.647 |
| SHJ78692.1 | SHJ78703.1 | SAMN02745912_01062 | SAMN02745912_01063 | Hypothetical protein. | PAS domain S-box-containing protein. | 0.993 |
| SHJ78692.1 | SHJ78722.1 | SAMN02745912_01062 | SAMN02745912_01064 | Hypothetical protein. | Response regulator receiver domain-containing protein. | 0.867 |
| SHJ78692.1 | SHJ78750.1 | SAMN02745912_01062 | SAMN02745912_01065 | Hypothetical protein. | Regulatory protein, Fis family. | 0.614 |
| SHJ78692.1 | SHJ88077.1 | SAMN02745912_01062 | SAMN02745912_01463 | Hypothetical protein. | Two-component system, NtrC family, sensor histidine kinase AtoS. | 0.628 |
| SHJ78703.1 | SHJ48728.1 | SAMN02745912_01063 | SAMN02745912_00088 | PAS domain S-box-containing protein. | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.767 |
| SHJ78703.1 | SHJ78692.1 | SAMN02745912_01063 | SAMN02745912_01062 | PAS domain S-box-containing protein. | Hypothetical protein. | 0.993 |
| SHJ78703.1 | SHJ78722.1 | SAMN02745912_01063 | SAMN02745912_01064 | PAS domain S-box-containing protein. | Response regulator receiver domain-containing protein. | 0.977 |
| SHJ78703.1 | SHJ78750.1 | SAMN02745912_01063 | SAMN02745912_01065 | PAS domain S-box-containing protein. | Regulatory protein, Fis family. | 0.757 |
| SHJ78722.1 | SHJ48728.1 | SAMN02745912_01064 | SAMN02745912_00088 | Response regulator receiver domain-containing protein. | Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.820 |
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