STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ79298.1Putative amidase domain-containing protein. (371 aa)    
Predicted Functional Partners:
SHK37591.1
D-alanyl-D-alanine carboxypeptidase.
     0.949
SHK43705.1
Hypothetical protein.
  
     0.680
SHJ61733.1
Outer membrane lipoprotein-sorting protein.
  
     0.678
SHJ58319.1
LysM domain-containing protein.
  
     0.636
SHK13111.1
Putative sporulation protein YtxC.
  
     0.605
SHJ79326.1
Similar to stage IV sporulation protein.
 
     0.577
SHJ89998.1
Hypothetical protein.
  
     0.564
SHJ51288.1
Putative membrane protein, TIGR04086 family.
  
     0.558
SHJ65514.1
Hypothetical protein.
  
     0.558
SHK13448.1
Single-stranded DNA-binding protein.
  
     0.542
Your Current Organism:
Paramaledivibacter caminithermalis
NCBI taxonomy Id: 1121301
Other names: Clostridium caminithermale DSM 15212, P. caminithermalis DSM 15212, Paramaledivibacter caminithermalis DSM 15212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.