STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ98933.1D-altronate dehydratase. (495 aa)    
Predicted Functional Partners:
uxaB
Tagaturonate reductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
 0.998
uxaC
D-glucuronate isomerase.
  
 0.979
SHK40671.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.937
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.914
SHJ98736.1
2-deoxy-D-gluconate 3-dehydrogenase.
    
 0.814
SHJ65400.1
Ribose 5-phosphate isomerase B.
     
 0.813
SHK46519.1
Sugar or nucleoside kinase, ribokinase family; Belongs to the carbohydrate kinase PfkB family.
    
 0.723
SHJ98895.1
Transcriptional regulator, LacI family.
 
     0.571
SHK11805.1
O-succinylbenzoate synthase.
  
 
 0.565
kduI
4-deoxy-L-threo-5-hexulose uronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.564
Your Current Organism:
Paramaledivibacter caminithermalis
NCBI taxonomy Id: 1121301
Other names: Clostridium caminithermale DSM 15212, P. caminithermalis DSM 15212, Paramaledivibacter caminithermalis DSM 15212
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