STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK04881.1ABC transporter. (150 aa)    
Predicted Functional Partners:
SHK32951.1
Putative ABC transport system permease protein.
 
 0.805
SHK12211.1
Putative ABC transport system permease protein.
  
 0.778
SHK04862.1
Hypothetical protein.
       0.773
SHJ63185.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family.
  
  
  0.744
SHK37231.1
ABC-2 type transport system ATP-binding protein.
  
  
  0.712
SHK01992.1
NitT/TauT family transport system ATP-binding protein.
  
     0.692
SHK56883.1
Putative ABC transport system permease protein.
  0.691
SHK23238.1
Energy-coupling factor transport system ATP-binding protein.
  
  
  0.690
SHJ86242.1
Putative ABC transport system permease protein.
  0.685
SHJ67555.1
Putative ABC transport system permease protein.
  0.675
Your Current Organism:
Paramaledivibacter caminithermalis
NCBI taxonomy Id: 1121301
Other names: Clostridium caminithermale DSM 15212, P. caminithermalis DSM 15212, Paramaledivibacter caminithermalis DSM 15212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.