STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK15382.1Stage V sporulation protein B. (517 aa)    
Predicted Functional Partners:
SHJ79653.1
tRNA (adenine22-N1)-methyltransferase.
  
     0.722
SHJ49846.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.688
SHK42351.1
RNA polymerase, sigma 30 subunit, SigH; Belongs to the sigma-70 factor family.
  
    0.633
SHK15174.1
Glutamine synthetase.
 
     0.590
SHJ95868.1
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.563
SHK21662.1
Sporulation protein YabP.
 
  
 0.529
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.523
SHK21575.1
AbrB family transcriptional regulator, stage V sporulation protein T.
 
   
 0.472
SHJ51260.1
Six-cysteine peptide SCIFF.
  
     0.429
SHK39304.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.425
Your Current Organism:
Paramaledivibacter caminithermalis
NCBI taxonomy Id: 1121301
Other names: Clostridium caminithermale DSM 15212, P. caminithermalis DSM 15212, Paramaledivibacter caminithermalis DSM 15212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.