STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI73083.1ABC-2 type transport system ATP-binding protein. (233 aa)    
Predicted Functional Partners:
SHI73043.1
ABC-2 type transport system permease protein.
 
 0.965
SHJ15826.1
ABC-2 type transport system permease protein.
 
 
 0.703
SHI94499.1
ABC-2 type transport system permease protein.
 
 
 0.616
SHJ27321.1
ABC-2 type transport system permease protein.
 
  0.611
SHI66669.1
ABC-2 family transporter protein.
  
  0.569
SHK44398.1
ABC-2 family transporter protein.
  
  0.559
SHJ39102.1
ABC-2 type transport system permease protein.
  
  0.558
SHJ40539.1
Hypothetical protein.
  
  0.548
SHJ84099.1
ABC-2 type transport system permease protein.
  
  0.548
SHJ42023.1
ABC-2 type transport system permease protein.
 
 
 0.533
Your Current Organism:
Clostridium cavendishii
NCBI taxonomy Id: 1121302
Other names: C. cavendishii DSM 21758, Clostridium cavendishii BL-28, Clostridium cavendishii DSM 21758, Clostridium sp. BL-28
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