STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ26358.1Signal transduction histidine kinase. (325 aa)    
Predicted Functional Partners:
SHJ26329.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.991
SHJ06401.1
PAS domain S-box-containing protein.
 
0.973
SHJ75758.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.911
SHJ26497.1
Putative ABC transport system permease protein.
 
 
 0.909
SHJ22762.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.899
SHK56302.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.895
SHI81468.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.894
SHJ29392.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.892
SHI96237.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.890
SHK68649.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.884
Your Current Organism:
Clostridium cavendishii
NCBI taxonomy Id: 1121302
Other names: C. cavendishii DSM 21758, Clostridium cavendishii BL-28, Clostridium cavendishii DSM 21758, Clostridium sp. BL-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.