STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK24041.1Hypothetical protein. (359 aa)    
Predicted Functional Partners:
SHJ76834.1
Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
 
  0.765
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
 0.517
SHI83903.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
     
 0.450
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.445
SHI91326.1
dCMP deaminase.
     
 0.435
SHK24073.1
Hypothetical protein.
       0.426
SHK24010.1
Putative amidase domain-containing protein.
       0.409
SHI91986.1
Sporulation protein YtfJ.
  
     0.408
SHK57269.1
Putative sporulation protein YyaC.
  
     0.407
SHI46560.1
Helix-turn-helix domain-containing protein.
  
  
  0.403
Your Current Organism:
Clostridium cavendishii
NCBI taxonomy Id: 1121302
Other names: C. cavendishii DSM 21758, Clostridium cavendishii BL-28, Clostridium cavendishii DSM 21758, Clostridium sp. BL-28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.