STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH70420.1Protein of unknown function. (140 aa)    
Predicted Functional Partners:
SHH70439.1
Hypothetical protein.
 
     0.903
SHH59209.1
Transcriptional regulator, TetR family.
 
     0.698
SHH59175.1
Hypothetical protein.
 
     0.640
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.625
SHH69831.1
Cytochrome c-type biogenesis protein.
  
  
 0.551
SHH43722.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
       0.433
SHH72855.1
TIGR04076 family protein.
  
     0.419
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.414
SHH32344.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.405
Your Current Organism:
Clostridium collagenovorans
NCBI taxonomy Id: 1121306
Other names: C. collagenovorans DSM 3089, Clostridium collagenovorans DSM 3089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.