STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH82088.1Spore germination protein. (395 aa)    
Predicted Functional Partners:
SHH82106.1
Spore germination protein (amino acid permease).
 
  
 0.980
SHH82126.1
Spore germination protein.
 
  
 0.973
SHH82075.1
Stage II sporulation protein R.
 
     0.820
SHH82183.1
Protein of unknown function.
 
     0.752
SHH46024.1
Stage II sporulation protein M.
  
     0.728
SHH41694.1
Sporulation integral membrane protein YlbJ.
  
     0.692
SHH78031.1
Putative sporulation protein YtxC.
  
     0.677
SHI07967.1
Stage II sporulation protein E.
  
     0.673
SHH45358.1
Stage III sporulation protein AE.
  
     0.671
SHH83011.1
Hypothetical protein.
  
     0.665
Your Current Organism:
Clostridium collagenovorans
NCBI taxonomy Id: 1121306
Other names: C. collagenovorans DSM 3089, Clostridium collagenovorans DSM 3089
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.