STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbrRubrerythrin. (196 aa)    
Predicted Functional Partners:
fdhF
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.623
KMT21161.1
Rubredoxin.
  
  
 0.564
fdhF-2
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.530
polC
DNA polymerase III PolC.
       0.504
gdh
NADP-specific glutamate dehydrogenase Gdh; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.468
KMT21178.1
Putative peroxiredoxin.
  
  
 0.463
KMT23323.1
Ferredoxin.
  
 
 0.456
KMT22253.1
Acetylene hydratase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.446
KMT22228.1
Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.436
hcp
Hydroxylamine reductase Hcp; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.422
Your Current Organism:
Clostridium cylindrosporum
NCBI taxonomy Id: 1121307
Other names: C. cylindrosporum DSM 605, Clostridium cylindrosporum DSM 605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.