STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH29481.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
SHH29454.1
Putative efflux protein, MATE family.
       0.705
SHH29431.1
Aspartyl aminopeptidase.
       0.660
SHH29503.1
YhhN-like protein.
       0.625
SHH29521.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.594
SHI00794.1
Hypothetical protein.
  
     0.468
SHH29416.1
Glucose-1-phosphate cytidylyltransferase.
       0.430
SHH13109.1
EcsC protein family protein.
  
     0.400
Your Current Organism:
Clostridium grantii
NCBI taxonomy Id: 1121316
Other names: C. grantii DSM 8605, Clostridium grantii DSM 8605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.