STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000686705_02310Unannotated protein. (267 aa)    
Predicted Functional Partners:
GCA_000686705_00335
Unannotated protein.
   
   0.867
GCA_000686705_02311
Unannotated protein.
       0.843
GCA_000686705_02312
Unannotated protein.
  
    0.719
GCA_000686705_02313
Unannotated protein.
       0.691
GCA_000686705_02308
Unannotated protein.
 
   
 0.598
GCA_000686705_02706
Unannotated protein.
    
 0.581
GCA_000686705_03699
Unannotated protein.
    
 0.581
GCA_000686705_02309
Unannotated protein.
       0.528
GCA_000686705_00208
Unannotated protein.
  
   
 0.504
GCA_000686705_02314
Unannotated protein.
  
  
 0.495
Your Current Organism:
Clostridium hydrogeniformans
NCBI taxonomy Id: 1121319
Other names: C. hydrogeniformans DSM 21757, Clostridium hydrogeniformans BL-20, Clostridium hydrogeniformans DSM 21757, Clostridium sp. BL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.