STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG48943.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (234 aa)    
Predicted Functional Partners:
SHG48908.1
Signal transduction histidine kinase.
  0.972
SHG68367.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.960
SHG71678.1
PAS domain S-box-containing protein.
 
 0.956
SHG71644.1
PAS domain S-box-containing protein.
 
 0.943
SHG76714.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  0.913
SHH01764.1
Signal transduction histidine kinase.
 
  0.888
SHH01587.1
Signal transduction histidine kinase.
 
  0.884
SHH47161.1
Signal transduction histidine kinase.
 
  0.882
SHH48019.1
PAS domain S-box-containing protein.
 
  0.880
SHG66237.1
Signal transduction histidine kinase.
 
  0.869
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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