STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG56311.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (380 aa)    
Predicted Functional Partners:
SHG77941.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.779
SHH34970.1
ATP synthase I chain.
  
     0.691
SHG38622.1
Tetratricopeptide repeat-containing protein.
  
     0.633
SHH03761.1
Competence protein ComFC.
  
    0.609
SHG90816.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.605
SHG97415.1
Penicillin-binding protein 2.
  
   
 0.560
SHG39792.1
Predicted transcriptional regulator.
  
     0.545
SHG98965.1
Hypothetical protein.
  
     0.529
SHG90784.1
Hypothetical protein.
  
     0.455
SHH52649.1
Prephenate dehydrogenase.
  
    0.450
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.