STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG66237.1Signal transduction histidine kinase. (448 aa)    
Predicted Functional Partners:
SHG66270.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.971
SHG69064.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.890
SHG54531.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.888
SHG76753.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 
  0.887
SHH11436.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.885
SHG53817.1
Two-component system, OmpR family, response regulator VanR.
 
  0.878
SHG58101.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.876
SHH01309.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.874
SHH01614.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.872
SHG48943.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.869
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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