STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG66478.1Putative ABC transport system ATP-binding protein. (218 aa)    
Predicted Functional Partners:
SHG66448.1
Putative ABC transport system permease protein.
  
 0.980
SHG94439.1
Putative ABC transport system ATP-binding protein.
 
  
 
0.929
SHG55372.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.900
SHH41285.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.900
ecfA
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.872
SHG66304.1
Putative ABC transport system permease protein.
      0.828
SHH06801.1
Cell division protein FtsX.
 
      0.544
SHG66512.1
4Fe-4S dicluster domain-containing protein.
       0.504
SHG66546.1
4Fe-4S binding domain-containing protein.
       0.504
SHH03346.1
ABC transporter.
  
  
  0.498
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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