STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG71989.1Predicted acetyltransferase. (388 aa)    
Predicted Functional Partners:
SHG71954.1
Hypothetical protein.
     0.968
SHG97869.1
Lactoylglutathione lyase.
  
     0.633
SHG72022.1
Competence protein ComEC.
       0.515
SHG72062.1
DNA polymerase III, delta subunit.
       0.513
SHG90784.1
Hypothetical protein.
  
     0.426
SHG71913.1
Competence protein ComEC.
       0.404
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.