STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG74143.1Predicted secreted protein. (187 aa)    
Predicted Functional Partners:
SHG74106.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
     0.783
SHG36301.1
Energy-coupling factor transport system substrate-specific component.
 
     0.768
SHG73976.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
     0.752
SHG74070.1
Amino acid ABC transporter membrane protein, PAAT family.
 
     0.736
SHG74038.1
Polar amino acid transport system ATP-binding protein.
       0.685
SHG73751.1
Uncharacterized conserved protein, DUF169 family.
  
     0.651
SHG78504.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.604
SHG78425.1
[methyl-Co(III) methanol-specific corrinoid protein]:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.507
SHG74011.1
Hypothetical protein.
       0.484
SHG78364.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.472
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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