STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH11542.1Uncharacterized membrane protein YcaP, DUF421 family. (218 aa)    
Predicted Functional Partners:
SHH11514.1
Protein of unknown function.
       0.770
SHG76380.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.685
SHG37675.1
Stage V sporulation protein AC.
 
  
 0.672
SHG37645.1
Stage V sporulation protein AD.
 
  
 0.665
SHG48486.1
Sporulation protein YtfJ.
  
     0.665
SHG72170.1
Stage II sporulation protein P.
  
     0.629
SHG37614.1
Stage V sporulation protein AE.
 
  
 0.620
SHG77123.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.559
SHG37555.1
Sporulation protein YunB.
  
     0.548
SHG44762.1
Sporulation integral membrane protein YlbJ.
  
     0.538
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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