STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH14764.1MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain. (282 aa)    
Predicted Functional Partners:
SHH14795.1
Predicted Fe-Mo cluster-binding protein, NifX family.
   
 0.984
SHG77941.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.957
SHH14709.1
Predicted Fe-Mo cluster-binding protein, NifX family.
 
   
 0.949
SHH17649.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
   
 0.946
SHH14731.1
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain.
 
    
0.857
SHH17710.1
NADH-quinone oxidoreductase subunit E.
   
 0.852
rnfB
Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.798
SHH17678.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
    
 0.790
SHG66414.1
Predicted DNA-binding protein, UPF0251 family; Belongs to the UPF0251 family.
 
     0.789
SHH14672.1
4Fe-4S single cluster domain of Ferredoxin I.
    
  0.573
Your Current Organism:
Asaccharospora irregularis
NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635
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