SHH48293.1 protein (Asaccharospora irregularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHH48293.1

N-6 DNA Methylase. (609 aa)

Predicted Functional Partners:

SHG35919.1

0.989

SHG40804.1

0.978

SHH48349.1

0.967

SHH48327.1

0.848

SHG40853.1

0.843

SHG69512.1

0.842

SHH07405.1

0.842

SHH25587.1

0.842

SHH18584.1

0.828

SHG35833.1

0.799

Your Current Organism:

Asaccharospora irregularis

NCBI taxonomy Id: 1121321
Other names: A. irregularis DSM 2635, Asaccharospora irregularis DSM 2635, Clostridium irregulare DSM 2635

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHG35833.1	SHG35919.1	SAMN04488530_1012	SAMN04488530_1015	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.866
SHG35833.1	SHH48293.1	SAMN04488530_1012	SAMN04488530_1564	Type I restriction enzyme, S subunit.	N-6 DNA Methylase.	0.799
SHG35919.1	SHG35833.1	SAMN04488530_1015	SAMN04488530_1012	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.866
SHG35919.1	SHG40853.1	SAMN04488530_1015	SAMN04488530_101182	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.541
SHG35919.1	SHH18584.1	SAMN04488530_1015	SAMN04488530_1251	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.496
SHG35919.1	SHH48293.1	SAMN04488530_1015	SAMN04488530_1564	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	N-6 DNA Methylase.	0.989
SHG35919.1	SHH48327.1	SAMN04488530_1015	SAMN04488530_1565	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme M protein.	0.708
SHG35919.1	SHH48349.1	SAMN04488530_1015	SAMN04488530_1566	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.546
SHG40804.1	SHG40853.1	SAMN04488530_101180	SAMN04488530_101182	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.956
SHG40804.1	SHH18584.1	SAMN04488530_101180	SAMN04488530_1251	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.496
SHG40804.1	SHH48293.1	SAMN04488530_101180	SAMN04488530_1564	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	N-6 DNA Methylase.	0.978
SHG40804.1	SHH48327.1	SAMN04488530_101180	SAMN04488530_1565	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme M protein.	0.708
SHG40804.1	SHH48349.1	SAMN04488530_101180	SAMN04488530_1566	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme, S subunit.	0.546
SHG40853.1	SHG35919.1	SAMN04488530_101182	SAMN04488530_1015	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.541
SHG40853.1	SHG40804.1	SAMN04488530_101182	SAMN04488530_101180	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.956
SHG40853.1	SHG69512.1	SAMN04488530_101182	SAMN04488530_105116	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit.	0.400
SHG40853.1	SHH25587.1	SAMN04488530_101182	SAMN04488530_13020	Type I restriction enzyme, S subunit.	Type I restriction enzyme, R subunit.	0.400
SHG40853.1	SHH48293.1	SAMN04488530_101182	SAMN04488530_1564	Type I restriction enzyme, S subunit.	N-6 DNA Methylase.	0.843
SHG40853.1	SHH48327.1	SAMN04488530_101182	SAMN04488530_1565	Type I restriction enzyme, S subunit.	Type I restriction enzyme M protein.	0.688
SHG40853.1	SHH48349.1	SAMN04488530_101182	SAMN04488530_1566	Type I restriction enzyme, S subunit.	Type I restriction enzyme, S subunit.	0.482