STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK64384.1Tocopherol cyclase. (306 aa)    
Predicted Functional Partners:
SHK64354.1
Glycine/D-amino acid oxidase.
 
     0.901
SHK64322.1
Protein of unknown function.
 
     0.693
SHK64288.1
Uncharacterized membrane protein YhfC.
 
     0.605
SHJ81464.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
     
 0.596
SHK64264.1
Sensor histidine kinase YesM.
 
     0.591
SHK64235.1
Two component transcriptional regulator, LytTR family.
       0.511
SHL77790.1
Uncharacterized protein, contains FMN-binding domain.
  
     0.494
SHK55598.1
General stress protein 26.
  
     0.446
SHK93212.1
Hypothetical protein.
  
     0.438
SHK35224.1
Spore photoproduct lyase.
 
     0.432
Your Current Organism:
Anaerocolumna jejuensis
NCBI taxonomy Id: 1121322
Other names: A. jejuensis DSM 15929, Anaerocolumna jejuensis DSM 15929, Clostridium jejuense DSM 15929, Clostridium sp. HY-35-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.