STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdE1Proline reductase operon protein PrdE. (156 aa)    
Predicted Functional Partners:
prdD1
Proline reductase operon protein PrdD.
   
 0.986
prdD2
Proline reductase operon protein PrdD.
   
 0.953
prdD3
D-proline reductase proprotein PrdD.
   
 0.949
prdD4
D-proline reductase proprotein PrdD.
   
 0.946
prdB1
D-proline reductase subunit gamma.
   
 0.900
KDR95289.1
Hypothetical protein.
 
     0.895
prdF1
Proline racemase PrdF; Belongs to the proline racemase family.
    
  0.885
prdC1
Electron transfer protein PrdC.
 
     0.833
prdB2
D-proline reductase subunit gamma.
   
 0.817
KDR95298.1
Hypothetical protein.
 
     0.808
Your Current Organism:
Peptoclostridium litorale
NCBI taxonomy Id: 1121324
Other names: Clostridium litorale (strain W6), Clostridium litorale DSM 5388, P. litorale DSM 5388, Peptoclostridium litorale DSM 5388, bacterium W6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.